A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
- Contact E-mail
- trex_info@cornell.edu
Report
generated on 2022-10-26, 13:20
based on data in:
/local/workdir/fa286/projects/BILLED_ARCHIVED/ARCHIVED/1100_TREx_workshop/STAR/STAR.LOGS
General Statistics
Showing 18/18 rows and 2/2 columns.Sample Name | % Aligned | M Aligned |
---|---|---|
1100-W14-14-A549-6hr | 90.0% | 13.2 |
1100-W15-15-A549-6hr | 88.6% | 24.2 |
1100-W17-17-A549-6hr | 89.0% | 29.7 |
1100-W26-26-A549-24hr | 90.0% | 12.8 |
1100-W27-27-A549-24hr | 88.9% | 16.1 |
1100-W3-3-A549-0hr | 85.8% | 14.2 |
1100-W30-30-A549-24hr | 89.9% | 19.0 |
1100-W37-37-293T-0hr | 85.6% | 14.7 |
1100-W4-4-A549-0hr | 89.5% | 22.0 |
1100-W40-40-293T-0hr | 87.7% | 28.9 |
1100-W42-42-293T-0hr | 82.0% | 9.5 |
1100-W49-49-293T-6hr | 87.7% | 21.6 |
1100-W53-53-293T-6hr | 86.8% | 21.9 |
1100-W54-54-293T-6hr | 88.0% | 16.9 |
1100-W61-61-293T-24hr | 88.8% | 20.6 |
1100-W62-62-293T-24hr | 88.3% | 21.9 |
1100-W64-64-293T-24hr | 88.8% | 18.3 |
1100-W7-7-A549-0hr | 78.7% | 16.0 |
STAR
STAR is an ultrafast universal RNA-seq aligner.
Alignment Scores
Gene Counts
Statistics from results generated using --quantMode GeneCounts
. The three tabs show counts for unstranded RNA-seq, counts for the 1st read strand aligned with RNA and counts for the 2nd read strand aligned with RNA.